Index

B

BIDSAuditor (class in bidsaid.audit)

C

check_events_availability() (bidsaid.audit.BIDSAuditor method) check_first_level_availability() (bidsaid.audit.BIDSAuditor method) check_preprocessed_nifti_availability() (bidsaid.audit.BIDSAuditor method) check_raw_nifti_availability() (bidsaid.audit.BIDSAuditor method) check_raw_sidecar_availability() (bidsaid.audit.BIDSAuditor method) clear_caches() (bidsaid.audit.BIDSAuditor static method) compress_image() (in module bidsaid.io) compute_consecutive_censor_stats() (in module bidsaid.qc) compute_effective_echo_spacing() (in module bidsaid.metadata) compute_framewise_displacement() (in module bidsaid.qc)

compute_global_signal() (in module bidsaid.qc) compute_n_dummy_scans() (in module bidsaid.qc) compute_total_readout_time() (in module bidsaid.metadata) convert_edat3_to_text() (in module bidsaid.parsers) create_bids_file() (in module bidsaid.files) create_censor_mask() (in module bidsaid.qc) create_dataset_description() (in module bidsaid.files) create_participant_tsv() (in module bidsaid.files) create_sessions_tsv() (in module bidsaid.files) create_slice_timing() (in module bidsaid.metadata) create_spike_regressors() (in module bidsaid.qc)

D

determine_slice_axis() (in module bidsaid.metadata)

direction_to_voxel_axis() (in module bidsaid.metadata)

E

EPrimeBlockExtractor (class in bidsaid.events) EPrimeEventExtractor (class in bidsaid.events) extract_accuracies() (bidsaid.events.EPrimeEventExtractor method) (bidsaid.events.PresentationEventExtractor method) extract_durations() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.EPrimeEventExtractor method) (bidsaid.events.PresentationBlockExtractor method) (bidsaid.events.PresentationEventExtractor method) extract_mean_accuracies() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.PresentationBlockExtractor method) extract_mean_reaction_times() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.PresentationBlockExtractor method)

extract_onsets() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.EPrimeEventExtractor method) (bidsaid.events.PresentationBlockExtractor method) (bidsaid.events.PresentationEventExtractor method) extract_reaction_times() (bidsaid.events.EPrimeEventExtractor method) (bidsaid.events.PresentationEventExtractor method) extract_response_counts() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.PresentationBlockExtractor method) extract_responses() (bidsaid.events.PresentationEventExtractor method) extract_trial_types() (bidsaid.events.EPrimeBlockExtractor method) (bidsaid.events.EPrimeEventExtractor method) (bidsaid.events.PresentationBlockExtractor method) (bidsaid.events.PresentationEventExtractor method)

G

generate_bids_filename() (in module bidsaid.files) get_entity_value() (in module bidsaid.files) get_file_creation_date() (in module bidsaid.path_utils) get_file_timestamp() (in module bidsaid.path_utils) get_hdr_metadata() (in module bidsaid.metadata) get_image_orientation() (in module bidsaid.metadata) get_n_censored_volumes() (in module bidsaid.qc)

get_n_slices() (in module bidsaid.metadata) get_n_volumes() (in module bidsaid.metadata) get_nifti_affine() (in module bidsaid.io) get_nifti_header() (in module bidsaid.io) get_presentation_log_date() (in module bidsaid.parsers) get_recon_matrix_pe() (in module bidsaid.metadata) get_scanner_info() (in module bidsaid.metadata) get_tr() (in module bidsaid.metadata)

I

infer_task_from_image() (in module bidsaid.metadata) is_3d_img() (in module bidsaid.metadata)

is_nifti_truncated() (in module bidsaid.io) is_valid_date() (in module bidsaid.path_utils)

L

load_eprime_log() (in module bidsaid.parsers)

load_nifti() (in module bidsaid.io) load_presentation_log() (in module bidsaid.parsers)

M

merge_censor_masks() (in module bidsaid.qc)

N

needs_resampling() (in module bidsaid.metadata)

P

parse_date_from_path() (in module bidsaid.path_utils)

PresentationBlockExtractor (class in bidsaid.events) PresentationEventExtractor (class in bidsaid.events)

R

regex_glob() (in module bidsaid.io)

replace_ext() (in module bidsaid.io)

S

save_dataset_description() (in module bidsaid.files) setup_logger() (in module bidsaid.logging)

simulate_bids_dataset() (in module bidsaid.simulate) simulate_nifti_image() (in module bidsaid.simulate) sort_by_acquisition_order() (in module bidsaid.path_utils)