bidsaid.audit.BIDSAuditor.check_raw_nifti_availability

BIDSAuditor.check_raw_nifti_availability(run_id=None)[source]

Checks the availability of the unpreprocessed NIfTI files for each subject and their sessions. Specifically checks if the T1w image is available and if unpreprocessed NIfTI images for all tasks (i.e. “rest”, “flanker”, etc) is available.

Important

  • Checks if at least file is available for a specific subject, session (if applicable), and task.

Parameters

run_idstr, int, or None, default=None

The specific run ID to check for.

Returns

pandas.DataFrame

A Pandas DataFrame denoting file availability, where “Yes” means the file is available and “No” means that the file is not available.

Notes

Example of output table:

subject

session

T1w

nback

flanker

mtle

mtlr

princess

101

01

Yes

Yes

Yes

Yes

Yes

Yes

101

02

Yes

Yes

No

Yes

Yes

Yes

102

01

Yes

Yes

Yes

Yes

Yes

Yes

103

01

No

Yes

Yes

Yes

Yes

Yes